Research workbench
Solution NMR structure of a 16-mer DNA duplex containing quadruple gc mismatches showing staggered base pairing, and consequent rescue of canonical double helical characteristics
Analyse Solution NMR structure of a 16-mer DNA duplex containing quadruple gc… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 5B81
- Type
- DNA
- Length
- 32 nucleotides
- Chains
- 2
- Method
- solution nmr
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- DNA (5'-D(*GP*CP*GP*CP*AP*TP*GP*CP*GP*CP*TP*AP*CP*GP*CP*G)- 3'); DNA…
Structure
solution nmr · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | DNA (5'-D(*GP*CP*GP*CP*AP*TP*GP*CP*GP*CP*TP*AP*CP*GP*CP*G)- 3') | dna | 16 | — | — |
| B | DNA (5'-D(*CP*GP*CP*GP*TP*AP*CP*GP*CP*GP*AP*TP*GP*CP*GP*C)- 3') | dna | 16 | — | — |
Interfaces
1 interface between chains.
- A–B · 776 Ų buried · 69 hydrogen bonds · nucleic-nucleic
Compared structures
- 5B81 · Solution NMR structure of a 16-mer DNA duplex containing quadruple GC mismatches showing… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 5B81 · PDBe 5B81
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.