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Crystal structure of the yajq-family protein XC_3703 from xanthomonas campestris PV.CAMPESTRIS

Analyse Crystal structure of the yajq-family protein XC_3703 from xanthomonas… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 5B7W
Type: protein
Length: 322 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: UPF0234 protein XC_3703
UniProt: Q4UQD0
Pockets: 3 · best druggability 0.55

Structure

x-ray diffraction · 1 distinct chain · 39% helix, 29% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B	UPF0234 protein XC_3703	protein	161	39% helix, 29% strand	Q4UQD0

Pockets

3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	355	0.55	0.74	46	empty
2	77	0.35	0.76	18	empty
3	57	0.26	0.73	12	empty

Interfaces

1 interface between chains.

A–B · 571 Å² buried · 11 hydrogen bonds · protein-protein

Compared structures

5B7W · Crystal structure of the YajQ-family protein XC_3703 from Xanthomonas campestris… · the same entry in another collection · chain A against A, TM-score 1.00
Q4UQD0 · AlphaFold monomer V2.0 prediction for UPF0234 protein XC_3703 (Q4UQD0) · a predicted model of the same protein · chain A against A, TM-score 0.98

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q4UQD0
Elsewhere: RCSB PDB 5B7W · PDBe 5B7W · UniProt Q4UQD0

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