Research workbench
Sulfur transferase ttua in complex with iron sulfur cluster and ATP derivative
Analyse Sulfur transferase ttua in complex with iron sulfur cluster and ATP derivative in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 5B4E
- Type
- protein
- Length
- 303 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Sulfur transferase ttua
- UniProt
- Q72LF3
- Ligands
- ANP, SF4, ZN, SO4
- Pockets
- 3 · best druggability 0.79
Structure
x-ray diffraction · 1 distinct chain · 48% helix, 13% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Sulfur transferase ttua | protein | 303 | 48% helix, 13% strand | Q72LF3 |
Ligands and binding sites
- ANP · Phosphoaminophosphonic acid-adenylate ester · ligand · chains A
- SF4 · Iron/sulfur cluster · ligand · chains A
- ZN · Zinc ion · metal · 2 copies · chains A
- SO4 · Sulfate ion · ion · 6 copies · chains A
- IPA · Isopropyl alcohol · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 1031 | 0.79 | 0.81 | 79 | ANP, SF4, SO4 |
| 2 | 141 | 0.46 | 0.77 | 25 | SO4 |
| 3 | 75 | 0.36 | 0.76 | 19 | empty |
Compared structures
- 5B4E · Sulfur Transferase TtuA in complex with iron sulfur cluster and ATP derivative · the same entry in another collection · chain A against A, TM-score 1.00
- Q72LF3 · AlphaFold monomer V2.0 prediction for tRNA-5-METHYLURIDINE(54) 2-sulfurtransferase… · a predicted model of the same protein · chain A against A, TM-score 0.97
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q72LF3
- Elsewhere: RCSB PDB 5B4E · PDBe 5B4E · UniProt Q72LF3
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