Research workbench
Human herpesvirus 6B tegument protein U14
Analyse Human herpesvirus 6B tegument protein U14 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 5B1Q
- Type
- protein
- Length
- 896 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- U14 protein
- UniProt
- Q9WT50
- Pockets
- 11 · best druggability 0.86
Structure
x-ray diffraction · 1 distinct chain · 62% helix, 4% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | U14 protein | protein | 448 | 62% helix, 4% strand | Q9WT50 |
Ligands and binding sites
- GOL · Glycerol · additive · 2 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
11 pockets found on a 1 Å grid, 8 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 1101 | 0.86 | 0.87 | 62 | empty |
| 2 | 388 | 0.67 | 0.80 | 44 | empty |
| 3 | 377 | 0.63 | 0.78 | 41 | empty |
| 4 | 316 | 0.59 | 0.78 | 48 | empty |
| 5 | 220 | 0.58 | 0.80 | 36 | empty |
Interfaces
1 interface between chains.
- A–B · 4434 Ų buried · 56 hydrogen bonds · protein-protein
Compared structures
- 5B1Q · Human herpesvirus 6B tegument protein U14 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9WT50
- Elsewhere: RCSB PDB 5B1Q · PDBe 5B1Q · UniProt Q9WT50
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