Research workbench
Crystal structure of a 79KDA fragment of flge, the hook protein from campylobacter jejuni
Analyse Crystal structure of a 79KDA fragment of flge, the hook protein from… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 5AZ4
- Type
- protein
- Length
- 2,904 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Flagellar hook subunit protein
- UniProt
- A0A0D6GSW4
- Pockets
- 20 · best druggability 0.73
Structure
x-ray diffraction · 1 distinct chain · 8% helix, 38% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C, D | Flagellar hook subunit protein | protein | 726 | 8% helix, 38% strand | A0A0D6GSW4 |
Pockets
20 pockets found on a 1 Å grid, 13 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 836 | 0.73 | 0.78 | 83 | empty |
| 2 | 400 | 0.73 | 0.84 | 54 | empty |
| 3 | 338 | 0.72 | 0.85 | 51 | empty |
| 4 | 1052 | 0.72 | 0.76 | 83 | empty |
| 5 | 348 | 0.68 | 0.82 | 54 | empty |
Interfaces
5 interfaces between chains.
- A–B · 1931 Ų buried · 52 hydrogen bonds · protein-protein
- C–D · 997 Ų buried · 12 hydrogen bonds · protein-protein
- A–D · 879 Ų buried · 9 hydrogen bonds · protein-protein
- B–C · 719 Ų buried · 8 hydrogen bonds · protein-protein
- B–D · 55 Ų buried · 1 hydrogen bond · protein-protein
Compared structures
- 5AZ4 · Crystal structure of a 79KDa fragment of FlgE, the hook protein from Campylobacter jejuni · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A0D6GSW4
- Elsewhere: RCSB PDB 5AZ4 · PDBe 5AZ4 · UniProt A0A0D6GSW4
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