Research workbench
Crystal structure of the SGIP1 mu homology domain in complex with an EPS15 fragment containing two dpf motifs (ydpfggdpfkg)
Analyse Crystal structure of the SGIP1 mu homology domain in complex with an EPS15… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 5AWT
- Type
- protein
- Length
- 276 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- SH3-containing GRB2-like protein 3-interacting protein 1; Epidermal growth factor…
- UniProt
- Q9BQI5
- Ligands
- ZN
Structure
x-ray diffraction · 2 distinct chains · 12% helix, 53% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | SH3-containing GRB2-like protein 3-interacting protein 1 | protein | 266 | 13% helix, 55% strand | Q9BQI5 |
| B | Epidermal growth factor receptor substrate 15 | protein | 10 | 0% helix, 0% strand | — |
Ligands and binding sites
- ZN · Zinc ion · metal · 6 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Interfaces
1 interface between chains.
- A–B · 528 Ų buried · 7 hydrogen bonds · protein-protein
Compared structures
- 5AWT · Crystal structure of the SGIP1 mu homology domain in complex with an Eps15 fragment… · the same entry in another collection · chain A against A, TM-score 1.00
- Q9BQI5 · AlphaFold monomer V2.0 prediction for SH3-containing GRB2-like protein 3-interacting… · a predicted model of the same protein · chain A against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9BQI5
- Elsewhere: RCSB PDB 5AWT · PDBe 5AWT · UniProt Q9BQI5
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