Research workbench
Crystal structure of the SGIP1 mu homology domain in the P1 space group
Analyse Crystal structure of the SGIP1 mu homology domain in the P1 space group in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 5AWS
- Type
- protein
- Length
- 540 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- SH3-containing GRB2-like protein 3-interacting protein 1
- UniProt
- Q9BQI5
- Ligands
- ZN
- Pockets
- 5 · best druggability 0.55
Structure
x-ray diffraction · 2 distinct chains · 11% helix, 56% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | SH3-containing GRB2-like protein 3-interacting protein 1 | protein | 275 | 10% helix, 54% strand | Q9BQI5 |
| B | SH3-containing GRB2-like protein 3-interacting protein 1 | protein | 265 | 12% helix, 57% strand | Q9BQI5 |
Ligands and binding sites
- ZN · Zinc ion · metal · 12 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
5 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 274 | 0.55 | 0.77 | 28 | empty |
| 2 | 220 | 0.54 | 0.78 | 29 | ZN |
| 3 | 225 | 0.54 | 0.77 | 34 | ZN |
| 4 | 61 | 0.28 | 0.74 | 16 | empty |
| 5 | 59 | 0.28 | 0.74 | 16 | empty |
Interfaces
1 interface between chains.
- A–B · 731 Ų buried · 4 hydrogen bonds · protein-protein
Compared structures
- 5AWS · Crystal structure of the SGIP1 mu homology domain in the P1 space group · the same entry in another collection · chain A against A, TM-score 1.00
- Q9BQI5 · AlphaFold monomer V2.0 prediction for SH3-containing GRB2-like protein 3-interacting… · a predicted model of the same protein · chain B against A, TM-score 0.98
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9BQI5
- Elsewhere: RCSB PDB 5AWS · PDBe 5AWS · UniProt Q9BQI5
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