Research workbench
Crystal structure of sufb-sufc-sufd complex from escherichia COLI
Analyse Crystal structure of sufb-sufc-sufd complex from escherichia COLI in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 5AWF
- Type
- protein
- Length
- 2,551 residues
- Chains
- 8
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Fes cluster assembly protein sufb; Fes cluster assembly protein sufd; Probable…
- UniProt
- P77522, P77689, P77499
- Pockets
- 20 · best druggability 0.53
Structure
x-ray diffraction · 6 distinct chains · 27% helix, 35% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Fes cluster assembly protein sufb | protein | 385 | 23% helix, 40% strand | P77522 |
| B, F | Fes cluster assembly protein sufd | protein | 414 | 20% helix, 41% strand | P77689 |
| C, G | Probable ATP-dependent transporter sufc | protein | 243 | 35% helix, 28% strand | P77499 |
| D | Probable ATP-dependent transporter sufc | protein | 235 | 33% helix, 28% strand | P77499 |
| E | Fes cluster assembly protein sufb | protein | 381 | 24% helix, 40% strand | P77522 |
| H | Probable ATP-dependent transporter sufc | protein | 236 | 34% helix, 26% strand | P77499 |
Pockets
20 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 187 | 0.53 | 0.78 | 23 | empty |
| 2 | 284 | 0.53 | 0.75 | 31 | empty |
| 3 | 166 | 0.51 | 0.78 | 29 | empty |
| 4 | 211 | 0.48 | 0.75 | 36 | empty |
| 5 | 126 | 0.47 | 0.79 | 21 | empty |
Interfaces
7 interfaces between chains.
- E–F · 1488 Ų buried · 28 hydrogen bonds · protein-protein
- A–B · 1436 Ų buried · 31 hydrogen bonds · protein-protein
- E–G · 1002 Ų buried · 12 hydrogen bonds · protein-protein
- A–C · 946 Ų buried · 10 hydrogen bonds · protein-protein
- B–D · 938 Ų buried · 18 hydrogen bonds · protein-protein
Compared structures
- 5AWF · Crystal structure of SufB-SufC-SufD complex from Escherichia coli · the same entry in another collection · chain H against H, TM-score 1.00
- P77689 · AlphaFold monomer V2.0 prediction for fes cluster assembly protein sufd (P77689) · a predicted model of the same protein · chain B against A, TM-score 0.99
- P77499 · AlphaFold monomer V2.0 prediction for probable ATP-dependent transporter sufc (P77499) · a predicted model of the same protein · chain H against A, TM-score 0.98
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P77522
- Every structure of UniProt P77689
- Every structure of UniProt P77499
- Elsewhere: RCSB PDB 5AWF · PDBe 5AWF · UniProt P77522 · UniProt P77689 · UniProt P77499
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