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Sequence matkddian inserted between GCN4 adaptors - structure T9(6)

Analyse Sequence matkddian inserted between GCN4 adaptors - structure T9(6) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 5APX
Type: protein
Length: 179 residues
Chains: 3
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: General control protein GCN4
UniProt: P03069
Ligands: PO4

Structure

x-ray diffraction · 2 distinct chains · 82% helix, 3% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B	General control protein GCN4	protein	60	82% helix, 3% strand	P03069
C	General control protein GCN4	protein	59	81% helix, 3% strand	P03069

Ligands and binding sites

PO4 · Phosphate ion · ion · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Interfaces

3 interfaces between chains.

B–C · 1366 Å² buried · 8 hydrogen bonds · protein-protein
A–B · 1322 Å² buried · 9 hydrogen bonds · protein-protein
A–C · 1315 Å² buried · 7 hydrogen bonds · protein-protein

Compared structures

5APX · Sequence MATKDDIAN inserted between GCN4 adaptors - Structure T9(6) · the same entry in another collection · chain A against A, TM-score 1.00
P03069 · AlphaFold monomer V2.0 prediction for general control transcription factor GCN4 (P03069) · a predicted model of the same protein · chain C against A, TM-score 0.51

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P03069
Elsewhere: RCSB PDB 5APX · PDBe 5APX · UniProt P03069

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