Research workbench

Crystal structure of the strawberry pathogenesis-related 10 (pr-10) fra a 2 protein (A141F) processed with the crystaldirect automated mounting and cryo-cooling technology

Analyse Crystal structure of the strawberry pathogenesis-related 10 (pr-10) fra a 2… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 5AMW
Type: protein
Length: 324 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Fra a 2 allergen
UniProt: D0E0C6
Pockets: 2 · best druggability 0.78

Structure

x-ray diffraction · 1 distinct chain · 30% helix, 43% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B	Fra a 2 allergen	protein	162	30% helix, 43% strand	D0E0C6

Pockets

2 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	630	0.78	0.83	63	empty
2	563	0.78	0.84	55	empty

Interfaces

1 interface between chains.

A–B · 386 Å² buried · 11 hydrogen bonds · protein-protein

Compared structures

5AMW · Crystal Structure of the Strawberry Pathogenesis-Related 10 (PR-10) Fra a 2 protein… · the same entry in another collection · chain A against A, TM-score 1.00
D0E0C6 · AlphaFold monomer V2.0 prediction for major strawberry allergen fra a 1-2 (D0E0C6) · a predicted model of the same protein · chain B against A, TM-score 0.97

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt D0E0C6
Elsewhere: RCSB PDB 5AMW · PDBe 5AMW · UniProt D0E0C6

GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.