Research workbench
Parm doublet model
Analyse Parm doublet model in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 5AI7
- Type
- protein
- Length
- 4,452 residues
- Chains
- 14
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Plasmid segregation protein parm
- UniProt
- P11904
- Pockets
- 2 · best druggability 0.34
Structure
electron microscopy · 1 distinct chain · 0% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C, D, E, F, G, H, I, J, K, L, M, N | Plasmid segregation protein parm | protein | 318 | 0% helix, 0% strand | P11904 |
Pockets
2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 90 | 0.34 | 0.72 | 26 | empty |
| 2 | 57 | 0.28 | 0.72 | 20 | empty |
Interfaces
14 interfaces between chains.
- E–H · 99 Ų buried · 0 hydrogen bonds · protein-protein
- I–K · 44 Ų buried · 0 hydrogen bonds · protein-protein
- B–D · 43 Ų buried · 0 hydrogen bonds · protein-protein
- E–G · 43 Ų buried · 0 hydrogen bonds · protein-protein
- C–E · 43 Ų buried · 0 hydrogen bonds · protein-protein
Compared structures
- 5AI7 · ParM doublet model · the same entry in another collection · chain N against N, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P11904
- Elsewhere: RCSB PDB 5AI7 · PDBe 5AI7 · UniProt P11904
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