Research workbench
A(GGGG) pentad-containing dimeric DNA quadruplex involving stacked G(ANTI)G(ANTI)G(ANTI)G(SYN) tetrads
Analyse A(GGGG) pentad-containing dimeric DNA quadruplex involving stacked… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 1JJP
- Type
- DNA
- Length
- 28 nucleotides
- Chains
- 2
- Method
- solution nmr
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- 5'-D(*GP*GP*GP*AP*GP*GP*TP*TP*TP*GP*GP*GP*AP*T)-3'
Structure
solution nmr · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | 5'-D(*GP*GP*GP*AP*GP*GP*TP*TP*TP*GP*GP*GP*AP*T)-3' | dna | 14 | — | — |
Interfaces
1 interface between chains.
- A–B · 625 Ų buried · 56 hydrogen bonds · nucleic-nucleic
Compared structures
- 1JJP · A(GGGG) Pentad-Containing Dimeric DNA Quadruplex Involving Stacked… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 1JJP · PDBe 1JJP
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