Research workbench
Crystal structure of bombyx mori CPV1 polyhedra base domain deleted mutant
Analyse Crystal structure of bombyx mori CPV1 polyhedra base domain deleted mutant in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 5A9B
- Type
- protein
- Length
- 209 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Polyhedrin
- UniProt
- P11041
- Pockets
- 3 · best druggability 0.51
Structure
x-ray diffraction · 1 distinct chain · 24% helix, 37% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Polyhedrin | protein | 209 | 24% helix, 37% strand | P11041 |
Pockets
3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 157 | 0.51 | 0.79 | 23 | empty |
| 2 | 59 | 0.31 | 0.76 | 17 | empty |
| 3 | 63 | 0.26 | 0.72 | 23 | empty |
Compared structures
- 5A9B · Crystal structure of Bombyx mori CPV1 polyhedra base domain deleted mutant · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P11041
- Elsewhere: RCSB PDB 5A9B · PDBe 5A9B · UniProt P11041
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