Research workbench

Crystal structure of sulfolobus acidocaldarius TRM10 at 2.1 ångström resolution.

Analyse Crystal structure of sulfolobus acidocaldarius TRM10 at 2.1 ångström resolution. in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 5A7Z
Type: protein
Length: 250 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: TRNA (ADENINE(9)-N1)-methyltransferase
EC: 2.1.1.218
UniProt: Q4J894
Pockets: 2 · best druggability 0.51

Structure

x-ray diffraction · 1 distinct chain · 34% helix, 28% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	TRNA (ADENINE(9)-N1)-methyltransferase (EC 2.1.1.218)	protein	250	34% helix, 28% strand	Q4J894

Pockets

2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	72	0.51	0.85	16	empty
2	58	0.37	0.79	20	empty

Modifications

Observed in the structure: 4 modified (engineered).

Compared structures

5A7Z · Crystal structure of Sulfolobus acidocaldarius Trm10 at 2.1 angstrom resolution. · the same entry in another collection · chain A against A, TM-score 1.00
Q4J894 · AlphaFold monomer V2.0 prediction for tRNA (ADENINE(9)-N1)-methyltransferase (Q4J894) · a predicted model of the same protein · chain A against A, TM-score 0.94

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q4J894
Elsewhere: RCSB PDB 5A7Z · PDBe 5A7Z · UniProt Q4J894

GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.