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Crystallographic structural determination of a trigonal laccase from coriolopsis gallica (cgl) to 1.5 a resolution
Analyse Crystallographic structural determination of a trigonal laccase from… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 5A7E
- Type
- protein
- Length
- 496 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Coriolopsis gallica laccase
- UniProt
- Q1W6B1
- Ligands
- BGC, NAG, CU
- Pockets
- 4 · best druggability 0.55
Structure
x-ray diffraction · 1 distinct chain · 11% helix, 38% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Coriolopsis gallica laccase | protein | 496 | 11% helix, 38% strand | Q1W6B1 |
Ligands and binding sites
- BGC · beta-D-glucopyranose · sugar · 6 copies · chains A
- NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 4 copies · chains A
- CU · Copper (II) ion · metal · 4 copies · chains A
- ACT · Acetate ion · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
4 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 136 | 0.55 | 0.81 | 19 | empty |
| 2 | 168 | 0.44 | 0.74 | 26 | empty |
| 3 | 96 | 0.44 | 0.79 | 23 | empty |
| 4 | 71 | 0.35 | 0.76 | 13 | empty |
Modifications
Observed in the structure: 2 glycan (N-glycosylation).
Compared structures
- 5A7E · Crystallographic Structural Determination of a Trigonal Laccase from Coriolopsis Gallica… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q1W6B1
- Elsewhere: RCSB PDB 5A7E · PDBe 5A7E · UniProt Q1W6B1
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