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Novel inter-subunit contacts in barley stripe mosaic virus revealed by cryo-EM

Analyse Novel inter-subunit contacts in barley stripe mosaic virus revealed by cryo-EM in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 5A79
Type: protein + RNA
Length: 180 residues
Chains: 2
Method: electron microscopy
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Capsid protein; RNA
UniProt: P04866
Pockets: 1 · best druggability 0.27

Structure

electron microscopy · 2 distinct chains · 36% helix, 5% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Capsid protein	protein	177	36% helix, 5% strand	P04866
R	RNA	rna	3	—	—

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	51	0.27	0.75	11	empty

Interfaces

1 interface between chains.

A–R · 413 Å² buried · 6 hydrogen bonds · protein-nucleic

Compared structures

5A79 · Novel inter-subunit contacts in Barley Stripe Mosaic Virus revealed by cryo-EM · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P04866
Elsewhere: RCSB PDB 5A79 · PDBe 5A79 · UniProt P04866

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