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High resolution structure of the thermostable glucuronoxylan endo- beta-1, 4-xylanase, CTXYN30A, from clostridium thermocellum with two xylobiose units bound

Analyse High resolution structure of the thermostable glucuronoxylan endo- beta-1… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 5A6L
Type: protein
Length: 389 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Carbohydrate binding family 6
EC: 3.2.1.8
UniProt: A3DJS9
Ligands: XYP, PO4
Pockets: 2 · best druggability 0.36

Structure

x-ray diffraction · 1 distinct chain · 27% helix, 34% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Carbohydrate binding family 6 (EC 3.2.1.8)	protein	389	27% helix, 34% strand	A3DJS9

Ligands and binding sites

XYP · beta-D-xylopyranose · sugar · 4 copies · chains A
PO4 · Phosphate ion · ion · 8 copies · chains A
PEG · Di(hydroxyethyl)ether · additive · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	97	0.36	0.74	18	XYP, PEG
2	53	0.30	0.76	17	empty

Compared structures

5A6L · High resolution structure of the thermostable glucuronoxylan endo-Beta-1, 4-xylanase… · the same entry in another collection · chain A against A, TM-score 1.00

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Every structure of UniProt A3DJS9
Elsewhere: RCSB PDB 5A6L · PDBe 5A6L · UniProt A3DJS9

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