Research workbench
Crystal structure of the ATTTM3 product complex with two orthophosphates and manganese ions (form B)
Analyse Crystal structure of the ATTTM3 product complex with two orthophosphates and… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 5A68
- Type
- protein
- Length
- 203 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Triphosphate tunel metalloenzyme 3
- EC
- 3.6.1.3, 3.6.1.25
- UniProt
- Q9SIY3
- Ligands
- MN, PO4
- Pockets
- 2 · best druggability 0.66
Structure
x-ray diffraction · 1 distinct chain · 31% helix, 46% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Triphosphate tunel metalloenzyme 3 (EC 3.6.1.3, 3.6.1.25) | protein | 203 | 31% helix, 46% strand | Q9SIY3 |
Ligands and binding sites
- MN · Manganese (II) ion · metal · 3 copies · chains A
- PO4 · Phosphate ion · ion · 2 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 297 | 0.66 | 0.82 | 48 | MN, PO4 |
| 2 | 50 | 0.38 | 0.81 | 14 | empty |
Compared structures
- 5A68 · Crystal structure of the AtTTM3 product complex with two orthophosphates and manganese… · the same entry in another collection · chain A against A, TM-score 1.00
- Q9SIY3 · AlphaFold monomer V2.0 prediction for triphosphate tunnel metalloenzyme 3 (Q9SIY3) · a predicted model of the same protein · chain A against A, TM-score 0.97
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9SIY3
- Elsewhere: RCSB PDB 5A68 · PDBe 5A68 · UniProt Q9SIY3
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