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Crystal structure of the bacteriophage T4 recombination mediator protein uvsy, lattice type III

Analyse Crystal structure of the bacteriophage T4 recombination mediator protein uvsy… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 4ZWS
Type: protein
Length: 732 residues
Chains: 7
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Recombination protein uvsy
UniProt: P04537
Pockets: 6 · best druggability 0.54

Structure

x-ray diffraction · 7 distinct chains · 88% helix, 0% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Recombination protein uvsy	protein	136	84% helix, 0% strand	P04537
B	Recombination protein uvsy	protein	116	89% helix, 0% strand	P04537
C	Recombination protein uvsy	protein	99	90% helix, 0% strand	P04537
D	Recombination protein uvsy	protein	96	86% helix, 0% strand	P04537
E	Recombination protein uvsy	protein	96	90% helix, 0% strand	P04537
F	Recombination protein uvsy	protein	93	90% helix, 0% strand	P04537
G	Recombination protein uvsy	protein	96	88% helix, 0% strand	P04537

Pockets

6 pockets found on a 1 Å grid, 5 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	72	0.54	0.86	18	empty
2	89	0.53	0.84	19	empty
3	83	0.51	0.84	18	empty
4	81	0.51	0.84	18	empty
5	77	0.51	0.84	18	empty

Interfaces

7 interfaces between chains.

A–B · 1623 Å² buried · 11 hydrogen bonds · protein-protein
B–C · 1281 Å² buried · 5 hydrogen bonds · protein-protein
C–D · 1266 Å² buried · 9 hydrogen bonds · protein-protein
F–G · 1222 Å² buried · 6 hydrogen bonds · protein-protein
D–E · 1221 Å² buried · 7 hydrogen bonds · protein-protein

Compared structures

4ZWS · Crystal Structure of the Bacteriophage T4 recombination mediator protein UvsY, Lattice… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P04537
Elsewhere: RCSB PDB 4ZWS · PDBe 4ZWS · UniProt P04537

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