Research workbench
Ebola virus nucleoprotein bound to VP35 chaperoning peptide P22121
Analyse Ebola virus nucleoprotein bound to VP35 chaperoning peptide P22121 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 4ZTG
- Type
- protein
- Length
- 338 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Polymerase cofactor VP35,NUCLEOPROTEIN fusion protein
- UniProt
- Q05127, P18272
- Pockets
- 4 · best druggability 0.41
Structure
x-ray diffraction · 1 distinct chain · 54% helix, 6% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Polymerase cofactor VP35,NUCLEOPROTEIN fusion protein | protein | 338 | 54% helix, 6% strand | Q05127, P18272 |
Pockets
4 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 55 | 0.41 | 0.81 | 16 | empty |
| 2 | 62 | 0.34 | 0.77 | 12 | empty |
| 3 | 62 | 0.32 | 0.76 | 17 | empty |
| 4 | 50 | 0.30 | 0.76 | 13 | empty |
Compared structures
- 4ZTG · Ebola virus nucleoprotein bound to VP35 chaperoning peptide P22121 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q05127
- Every structure of UniProt P18272
- Elsewhere: RCSB PDB 4ZTG · PDBe 4ZTG · UniProt Q05127 · UniProt P18272
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