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Crystal structure of the ligand-free effector-binding domain of dasr (dasr-ebd)

Analyse Crystal structure of the ligand-free effector-binding domain of dasr (dasr-ebd) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 4ZSB
Type: protein
Length: 162 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Hth-type transcriptional repressor dasr
UniProt: Q9K492
Pockets: 1 · best druggability 0.60

Structure

x-ray diffraction · 1 distinct chain · 22% helix, 40% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Hth-type transcriptional repressor dasr	protein	162	22% helix, 40% strand	Q9K492

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	238	0.60	0.80	35	empty

Compared structures

4ZSB · Crystal structure of the ligand-free effector-binding domain of DasR (DasR-EBD) · the same entry in another collection · chain A against A, TM-score 1.00
Q9K492 · AlphaFold monomer V2.0 prediction for hth-type transcriptional repressor dasr (Q9K492) · a predicted model of the same protein · chain A against A, TM-score 0.93

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q9K492
Elsewhere: RCSB PDB 4ZSB · PDBe 4ZSB · UniProt Q9K492

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