Research workbench
2.20 ångström resolution crystal structure of protein YE0340 of unidentified function from yersinia enterocolitica subsp. enterocolitica 8081]
Analyse 2.20 ångström resolution crystal structure of protein YE0340 of unidentified… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 4ZOS
- Type
- protein
- Length
- 403 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Protein YE0340 from yersinia enterocolitica subsp. enterocolitica 8081
- Ligands
- PO4
- Pockets
- 7 · best druggability 0.67
Structure
x-ray diffraction · 4 distinct chains · 44% helix, 38% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Protein YE0340 from yersinia enterocolitica subsp. enterocolitica 8081 | protein | 105 | 47% helix, 36% strand | — |
| B | Protein YE0340 from yersinia enterocolitica subsp. enterocolitica 8081 | protein | 97 | 42% helix, 39% strand | — |
| C | Protein YE0340 from yersinia enterocolitica subsp. enterocolitica 8081 | protein | 103 | 46% helix, 37% strand | — |
| D | Protein YE0340 from yersinia enterocolitica subsp. enterocolitica 8081 | protein | 98 | 41% helix, 40% strand | — |
Ligands and binding sites
- PO4 · Phosphate ion · ion · 2 copies · chains B, D
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
7 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 457 | 0.67 | 0.79 | 49 | empty |
| 2 | 99 | 0.53 | 0.82 | 19 | empty |
| 3 | 78 | 0.51 | 0.83 | 17 | PO4 |
| 4 | 103 | 0.50 | 0.80 | 16 | empty |
| 5 | 96 | 0.50 | 0.81 | 18 | PO4 |
Interfaces
5 interfaces between chains.
- A–B · 1090 Ų buried · 19 hydrogen bonds · protein-protein
- C–D · 1088 Ų buried · 18 hydrogen bonds · protein-protein
- B–D · 208 Ų buried · 1 hydrogen bond · protein-protein
- A–D · 167 Ų buried · 0 hydrogen bonds · protein-protein
- A–C · 73 Ų buried · 0 hydrogen bonds · protein-protein
Compared structures
- 4ZOS · 2.20 Angstrom resolution crystal structure of protein YE0340 of unidentified function… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 4ZOS · PDBe 4ZOS
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.