Research workbench
Glycosyl hydrolase from pseudomonas aeruginosa
Analyse Glycosyl hydrolase from pseudomonas aeruginosa in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 4ZN2
- Type
- protein
- Length
- 1,652 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Pslg
- UniProt
- Q9I1N2
- Pockets
- 14 · best druggability 0.80
Structure
x-ray diffraction · 1 distinct chain · 33% helix, 26% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C, D | Pslg | protein | 413 | 33% helix, 26% strand | Q9I1N2 |
Pockets
14 pockets found on a 1 Å grid, 7 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 835 | 0.80 | 0.83 | 118 | empty |
| 2 | 1132 | 0.80 | 0.81 | 132 | empty |
| 3 | 111 | 0.75 | 0.95 | 18 | empty |
| 4 | 106 | 0.61 | 0.87 | 26 | empty |
| 5 | 113 | 0.60 | 0.86 | 23 | empty |
Interfaces
3 interfaces between chains.
- A–B · 1078 Ų buried · 16 hydrogen bonds · protein-protein
- C–D · 1057 Ų buried · 15 hydrogen bonds · protein-protein
- A–D · 594 Ų buried · 8 hydrogen bonds · protein-protein
Compared structures
- 4ZN2 · Glycosyl hydrolase from Pseudomonas aeruginosa · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9I1N2
- Elsewhere: RCSB PDB 4ZN2 · PDBe 4ZN2 · UniProt Q9I1N2
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