Research workbench
The chemokine binding protein of orf virus complexed with CCL3
Analyse The chemokine binding protein of orf virus complexed with CCL3 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 4ZKB
- Type
- protein
- Length
- 267 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Chemokine binding protein; C-C motif chemokine 3
- UniProt
- Q2F862, P10147
- Ligands
- NAG, BMA
- Pockets
- 2 · best druggability 0.55
Structure
x-ray diffraction · 2 distinct chains · 15% helix, 40% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Chemokine binding protein | protein | 218 | 16% helix, 44% strand | Q2F862 |
| B | C-C motif chemokine 3 | protein | 49 | 12% helix, 22% strand | P10147 |
Ligands and binding sites
- NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 4 copies · chains A
- BMA · beta-D-mannopyranose · sugar
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 281 | 0.55 | 0.76 | 42 | empty |
| 2 | 51 | 0.28 | 0.75 | 16 | empty |
Interfaces
1 interface between chains.
- A–B · 813 Ų buried · 21 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 5 disulfide, 2 glycan (disulfide, N-glycosylation).
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q2F862
- Every structure of UniProt P10147
- Elsewhere: RCSB PDB 4ZKB · PDBe 4ZKB · UniProt Q2F862 · UniProt P10147
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