Research workbench
Crystal structure of janus kinase 2 in complex with a 9H-carbazole-1- carboxamide inhibitor
Analyse Crystal structure of janus kinase 2 in complex with a 9H-carbazole-1… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 4ZIM
- Type
- protein
- Length
- 583 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Tyrosine-protein kinase JAK2
- EC
- 2.7.10.2
- UniProt
- O60674
- Ligands
- 4OK
- Pockets
- 5 · best druggability 0.75
Structure
x-ray diffraction · 2 distinct chains · 44% helix, 18% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Tyrosine-protein kinase JAK2 (EC 2.7.10.2) | protein | 287 | 44% helix, 18% strand | O60674 |
| B | Tyrosine-protein kinase JAK2 (EC 2.7.10.2) | protein | 296 | 44% helix, 18% strand | O60674 |
Ligands and binding sites
- 4OK · 3-(3,4-dichlorophenyl)-6-(morpholin-4-ylcarbonyl)-9H-carbazole-1-carboxamide · ligand · 2 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
5 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 516 | 0.75 | 0.83 | 53 | 4OK |
| 2 | 494 | 0.71 | 0.80 | 48 | 4OK |
| 3 | 591 | 0.67 | 0.77 | 55 | empty |
| 4 | 73 | 0.36 | 0.77 | 18 | empty |
| 5 | 53 | 0.34 | 0.78 | 14 | empty |
Interfaces
1 interface between chains.
- A–B · 526 Ų buried · 13 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 4 modified (phosphorylation).
Compared structures
- 4ZIM · Crystal structure of janus kinase 2 in complex with a 9H-carbazole-1-carboxamide inhibitor · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt O60674
- Elsewhere: RCSB PDB 4ZIM · PDBe 4ZIM · UniProt O60674
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