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Crystal structure of mouse syndesmos protein
Analyse Crystal structure of mouse syndesmos protein in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 4ZG0
- Type
- protein
- Length
- 386 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Protein syndesmos
- UniProt
- Q8VHN8
- Pockets
- 5 · best druggability 0.70
Structure
x-ray diffraction · 2 distinct chains · 33% helix, 33% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Protein syndesmos | protein | 191 | 34% helix, 34% strand | Q8VHN8 |
| B | Protein syndesmos | protein | 195 | 32% helix, 32% strand | Q8VHN8 |
Pockets
5 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 460 | 0.70 | 0.81 | 61 | empty |
| 2 | 495 | 0.64 | 0.76 | 68 | empty |
| 3 | 78 | 0.36 | 0.76 | 20 | empty |
| 4 | 75 | 0.34 | 0.75 | 18 | empty |
| 5 | 57 | 0.31 | 0.76 | 16 | empty |
Interfaces
1 interface between chains.
- A–B · 1549 Ų buried · 18 hydrogen bonds · protein-protein
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8VHN8
- Elsewhere: RCSB PDB 4ZG0 · PDBe 4ZG0 · UniProt Q8VHN8
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