Research workbench

Pbp acca from a. tumefaciens C58 in complex with L-arabinose-2- phosphate

Analyse Pbp acca from a. tumefaciens C58 in complex with L-arabinose-2- phosphate in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 4ZEI
Type: protein
Length: 490 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: ABC transporter, substrate binding protein (agrocinopines a and B)
UniProt: Q7D2F4
Ligands: LAO
Pockets: 4 · best druggability 0.73

Structure

x-ray diffraction · 1 distinct chain · 31% helix, 24% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	ABC transporter, substrate binding protein (agrocinopines a and B)	protein	490	31% helix, 24% strand	Q7D2F4

Ligands and binding sites

LAO · 2-O-phosphono-alpha-L-arabinopyranose · ligand · chains A
EDO · 1,2-ethanediol · additive · 5 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

4 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	574	0.73	0.81	50	LAO, EDO
2	231	0.73	0.88	35	empty
3	110	0.46	0.79	19	empty
4	53	0.28	0.75	15	EDO

Compared structures

4ZEI · PBP AccA from A. tumefaciens C58 in complex with L-arabinose-2-phosphate · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q7D2F4
Elsewhere: RCSB PDB 4ZEI · PDBe 4ZEI · UniProt Q7D2F4

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