Research workbench
Crystal structure of the bacterial lysozyme from streptomyces coelicolor at 1.65 a resolution
Analyse Crystal structure of the bacterial lysozyme from streptomyces coelicolor at… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 1JFX
- Type
- protein
- Length
- 217 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- 1,4-beta-N-acetylmuramidase M1
- EC
- 3.2.1.17
- UniProt
- P25310
- Ligands
- CL
- Pockets
- 2 · best druggability 0.37
Structure
x-ray diffraction · 1 distinct chain · 30% helix, 25% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | 1,4-beta-N-acetylmuramidase M1 (EC 3.2.1.17) | protein | 217 | 30% helix, 25% strand | P25310 |
Ligands and binding sites
- CL · Chloride ion · ion · 8 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 85 | 0.37 | 0.76 | 22 | empty |
| 2 | 86 | 0.36 | 0.76 | 19 | CL |
Modifications
Observed in the structure: 1 disulfide (disulfide).
Compared structures
- 1JFX · Crystal structure of the bacterial lysozyme from Streptomyces coelicolor at 1.65 A… · the same entry in another collection · chain A against A, TM-score 1.00
- P25310 · AlphaFold monomer V2.0 prediction for lysozyme M1 (P25310) · a predicted model of the same protein · chain A against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P25310
- Elsewhere: RCSB PDB 1JFX · PDBe 1JFX · UniProt P25310
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