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Crystal structure of the apo ATNUDT7

Analyse Crystal structure of the apo ATNUDT7 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB
4ZB3
Type
protein
Length
262 residues
Chains
1
Method
x-ray diffraction
Collection
MolNFT v1 / PDB
Contract
0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner
0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule
Nudix hydrolase 7
EC
3.6.1.-, 3.6.1.13, 3.6.1.22
UniProt
Q9SU14
Ligands
SO4
Pockets
1 · best druggability 0.59

Structure

x-ray diffraction · 1 distinct chain · 25% helix, 35% strand (DSSP).

ChainMoleculeTypeResiduesSecondary structureUniProt
ANudix hydrolase 7 (EC 3.6.1.-, 3.6.1.13, 3.6.1.22)protein26225% helix, 35% strandQ9SU14

Ligands and binding sites

  • SO4 · Sulfate ion · ion · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

PocketVolume (ų)DruggabilityBuriednessLining residuesInside
12210.590.8028empty

Compared structures

  • 4ZB3 · Crystal structure of the apo AtNUDT7 · the same entry in another collection · chain A against A, TM-score 1.00
  • Q9SU14 · AlphaFold monomer V2.0 prediction for nudix hydrolase 7 (Q9SU14) · a predicted model of the same protein · chain A against A, TM-score 0.67

Analyse

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