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Structure of ubix E49Q in complex with a covalent adduct between dimethylallyl monophosphate and reduced FMN

Analyse Structure of ubix E49Q in complex with a covalent adduct between dimethylallyl… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 4ZAY
Type: protein
Length: 207 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Ubix
EC: 4.1.1.-
UniProt: Q9HX08
Ligands: 4LS, K, SCN, PO4

Structure

x-ray diffraction · 1 distinct chain · 42% helix, 14% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Ubix (EC 4.1.1.-)	protein	207	42% helix, 14% strand	Q9HX08

Ligands and binding sites

4LS · 1-deoxy-1-[7,8-dimethyl-5-(3-methylbut-2-en-1-yl)-2,4-dioxo-1,3,4,5-tetrahydrobenzo[g]pteridin-10(2H)-yl]-5-O-phosphono-D-ribitol · ligand · chains A
K · Potassium ion · metal · chains A
SCN · Thiocyanate ion · ion · 3 copies · chains A
PO4 · Phosphate ion · ion · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

4ZAY · Structure of UbiX E49Q in complex with a covalent adduct between dimethylallyl… · the same entry in another collection · chain A against A, TM-score 1.00
Q9HX08 · AlphaFold monomer V2.0 prediction for flavin prenyltransferase ubix (Q9HX08) · a predicted model of the same protein · chain A against A, TM-score 0.99

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Every structure of UniProt Q9HX08
Elsewhere: RCSB PDB 4ZAY · PDBe 4ZAY · UniProt Q9HX08

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