Research workbench
Crystal structure of AVRRXO1-ORF1:AVRRXO1-ORF2 with sulphate ions
Analyse Crystal structure of AVRRXO1-ORF1:AVRRXO1-ORF2 with sulphate ions in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 4Z8T
- Type
- protein
- Length
- 429 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- AVRRXO1-ORF1; AVRRXO1-ORF2
- UniProt
- Q6TKR8, Q6TKR9
- Ligands
- SO4
- Pockets
- 4 · best druggability 0.85
Structure
x-ray diffraction · 2 distinct chains · 56% helix, 10% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | AVRRXO1-ORF1 | protein | 331 | 52% helix, 13% strand | Q6TKR8 |
| B | AVRRXO1-ORF2 | protein | 98 | 67% helix, 1% strand | Q6TKR9 |
Ligands and binding sites
- SO4 · Sulfate ion · ion · 5 copies · chains A
- GOL · Glycerol · additive · chains A
- ACT · Acetate ion · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
4 pockets found on a 1 Å grid, 4 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 935 | 0.85 | 0.86 | 117 | SO4, GOL |
| 2 | 295 | 0.64 | 0.80 | 31 | empty |
| 3 | 66 | 0.60 | 0.91 | 22 | empty |
| 4 | 133 | 0.53 | 0.81 | 25 | empty |
Interfaces
1 interface between chains.
- A–B · 1867 Ų buried · 19 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 5 modified (engineered).
Compared structures
- 4Z8T · CRYSTAL STRUCTURE OF AvrRxo1-ORF1:AvrRxo1-ORF2 WITH SULPHATE IONS · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q6TKR8
- Every structure of UniProt Q6TKR9
- Elsewhere: RCSB PDB 4Z8T · PDBe 4Z8T · UniProt Q6TKR8 · UniProt Q6TKR9
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.