Research workbench
Crystal structure of AVRRXO1-ORF1:AVRRXO1-ORF2 complex, selenomethionine substituted.
Analyse Crystal structure of AVRRXO1-ORF1:AVRRXO1-ORF2 complex, selenomethionine… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 4Z8Q
- Type
- protein
- Length
- 427 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- AVRRXO1-ORF1; AVRRXO1-ORF2
- UniProt
- Q6TKR8, Q6TKR9
- Ligands
- PO4
- Pockets
- 5 · best druggability 0.82
Structure
x-ray diffraction · 2 distinct chains · 56% helix, 10% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | AVRRXO1-ORF1 | protein | 329 | 53% helix, 13% strand | Q6TKR8 |
| B | AVRRXO1-ORF2 | protein | 98 | 66% helix, 1% strand | Q6TKR9 |
Ligands and binding sites
- PO4 · Phosphate ion · ion · 5 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
5 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 1174 | 0.82 | 0.83 | 127 | PO4 |
| 2 | 247 | 0.62 | 0.81 | 30 | PO4 |
| 3 | 165 | 0.50 | 0.78 | 32 | empty |
| 4 | 51 | 0.35 | 0.79 | 12 | empty |
| 5 | 53 | 0.29 | 0.75 | 16 | empty |
Interfaces
1 interface between chains.
- A–B · 1670 Ų buried · 19 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 5 modified (engineered).
Compared structures
- 4Z8Q · CRYSTAL STRUCTURE OF AvrRxo1-ORF1:AvrRxo1-ORF2 COMPLEX, SELENOMETHIONINE SUBSTITUTED. · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q6TKR8
- Every structure of UniProt Q6TKR9
- Elsewhere: RCSB PDB 4Z8Q · PDBe 4Z8Q · UniProt Q6TKR8 · UniProt Q6TKR9
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