Research workbench
SH3-III of drosophila rim-binding protein bound to a cacophony derived peptide
Analyse SH3-III of drosophila rim-binding protein bound to a cacophony derived peptide in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 4Z8A
- Type
- protein
- Length
- 90 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Rim-binding protein, isoform F; Voltage-dependent calcium channel type a subunit alpha-1
- UniProt
- A0A0B4JDC9, P91645
- Ligands
- ACE, NH2
Structure
x-ray diffraction · 2 distinct chains · 12% helix, 30% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Rim-binding protein, isoform F | protein | 75 | 15% helix, 36% strand | A0A0B4JDC9 |
| B | Voltage-dependent calcium channel type a subunit alpha-1 | protein | 15 | 0% helix, 0% strand | P91645 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Interfaces
1 interface between chains.
- A–B · 742 Ų buried · 12 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 1 covalent (covalent ligand).
Compared structures
- 4Z8A · SH3-III of Drosophila Rim-binding protein bound to a Cacophony derived peptide · the same entry in another collection · chain A against A, TM-score 1.00
- P91645 · AlphaFold monomer V2.0 prediction for voltage-dependent calcium channel type a subunit… · a predicted model of the same protein · chain B against A, TM-score 0.31
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A0B4JDC9
- Every structure of UniProt P91645
- Elsewhere: RCSB PDB 4Z8A · PDBe 4Z8A · UniProt A0A0B4JDC9 · UniProt P91645
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