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Crystal structure of apo intact hoefavidin
Analyse Crystal structure of apo intact hoefavidin in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 4Z6J
- Type
- protein
- Length
- 263 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Avidin family
- UniProt
- A9D857
- Pockets
- 3 · best druggability 0.50
Structure
x-ray diffraction · 2 distinct chains · 0% helix, 59% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Avidin family | protein | 133 | 0% helix, 59% strand | A9D857 |
| B | Avidin family | protein | 130 | 0% helix, 58% strand | A9D857 |
Pockets
3 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 141 | 0.50 | 0.79 | 21 | empty |
| 2 | 123 | 0.49 | 0.79 | 18 | empty |
| 3 | 68 | 0.33 | 0.76 | 25 | empty |
Interfaces
1 interface between chains.
- A–B · 1651 Ų buried · 14 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 2 disulfide (disulfide).
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A9D857
- Elsewhere: RCSB PDB 4Z6J · PDBe 4Z6J · UniProt A9D857
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