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Structure of nt domain

Analyse Structure of nt domain in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 4Z6G
Type: protein
Length: 334 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5
UniProt: Q9UPN3
Ligands: PO4
Pockets: 2 · best druggability 0.53

Structure

x-ray diffraction · 1 distinct chain · 61% helix, 0% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5	protein	334	61% helix, 0% strand	Q9UPN3

Ligands and binding sites

PO4 · Phosphate ion · ion · 2 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	128	0.53	0.81	18	PO4
2	76	0.41	0.79	18	empty

Modifications

Observed in the structure: 1 disulfide (disulfide).

Compared structures

4Z6G · Structure of NT domain · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q9UPN3
Elsewhere: RCSB PDB 4Z6G · PDBe 4Z6G · UniProt Q9UPN3

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