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The plant peptide hormone receptor in arabidopsis

Analyse The plant peptide hormone receptor in arabidopsis in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 4Z63
Type: protein
Length: 615 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Phytosulfokine receptor 1; Phytosulfokine
EC: 2.7.11.1
UniProt: Q9ZVR7
Ligands: NAG
Pockets: 3 · best druggability 0.56

Structure

x-ray diffraction · 2 distinct chains · 18% helix, 22% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Phytosulfokine receptor 1 (EC 2.7.11.1)	protein	610	18% helix, 22% strand	Q9ZVR7
P	Phytosulfokine	protein	5	0% helix, 40% strand	—

Ligands and binding sites

NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 9 copies · chains A, P

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	228	0.56	0.79	29	empty
2	70	0.39	0.78	12	empty
3	59	0.28	0.74	18	empty

Interfaces

1 interface between chains.

A–P · 764 Å² buried · 17 hydrogen bonds · protein-protein

Modifications

Observed in the structure: 8 glycan, 5 disulfide, 2 modified (N-glycosylation, disulfide, sulfation).

Compared structures

4Z63 · The plant peptide hormone receptor in arabidopsis · the same entry in another collection · chain A against A, TM-score 1.00
Q9ZVR7 · AlphaFold monomer V2.0 prediction for phytosulfokine receptor 1 (Q9ZVR7) · a predicted model of the same protein · chain A against A, TM-score 0.99

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q9ZVR7
Elsewhere: RCSB PDB 4Z63 · PDBe 4Z63 · UniProt Q9ZVR7

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