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Structure of OBP3 from the currant-lettuce aphid nasonovia ribisnigri

Analyse Structure of OBP3 from the currant-lettuce aphid nasonovia ribisnigri in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 4Z45
Type: protein
Length: 353 residues
Chains: 3
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Odorant-binding protein NRIBOBP3
UniProt: C5J8G4
Pockets: 3 · best druggability 0.47

Structure

x-ray diffraction · 2 distinct chains · 64% helix, 2% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, D	Odorant-binding protein NRIBOBP3	protein	118	64% helix, 2% strand	C5J8G4
B	Odorant-binding protein NRIBOBP3	protein	117	64% helix, 2% strand	C5J8G4

Pockets

3 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	98	0.47	0.80	16	empty
2	94	0.46	0.80	15	empty
3	87	0.45	0.80	15	empty

Interfaces

1 interface between chains.

A–B · 632 Å² buried · 12 hydrogen bonds · protein-protein

Modifications

Observed in the structure: 9 disulfide (disulfide).

Compared structures

4Z45 · Structure of OBP3 from the currant-lettuce aphid Nasonovia ribisnigri · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt C5J8G4
Elsewhere: RCSB PDB 4Z45 · PDBe 4Z45 · UniProt C5J8G4

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