Research workbench
Mate transporter clbm in complex with rb+
Analyse Mate transporter clbm in complex with rb+ in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 4Z3P
- Type
- protein
- Length
- 431 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Putative DRUG/SODIUM antiporter
- UniProt
- Q0P7K3
- Ligands
- RB
- Pockets
- 5 · best druggability 0.85
Structure
x-ray diffraction · 1 distinct chain · 84% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Putative DRUG/SODIUM antiporter | protein | 431 | 84% helix, 0% strand | Q0P7K3 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
5 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 910 | 0.85 | 0.86 | 71 | RB |
| 2 | 340 | 0.69 | 0.82 | 24 | empty |
| 3 | 95 | 0.42 | 0.78 | 17 | empty |
| 4 | 145 | 0.41 | 0.74 | 23 | empty |
| 5 | 76 | 0.40 | 0.77 | 14 | empty |
Compared structures
- 4Z3P · MATE transporter ClbM in complex with Rb+ · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q0P7K3
- Elsewhere: RCSB PDB 4Z3P · PDBe 4Z3P · UniProt Q0P7K3
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