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Crystal structure of component IV glycera dibranchiata monomeric hemoglobin

Analyse Crystal structure of component IV glycera dibranchiata monomeric hemoglobin in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 1JF4
Type: protein
Length: 147 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Monomer hemoglobin component IV
UniProt: P15447
Ligands: HEM
Pockets: 1 · best druggability 0.72

Structure

x-ray diffraction · 1 distinct chain · 79% helix, 0% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Monomer hemoglobin component IV	protein	147	79% helix, 0% strand	P15447

Ligands and binding sites

HEM · Protoporphyrin IX containing Fe · ligand · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	247	0.72	0.86	30	HEM

Compared structures

1JF4 · Crystal Structure Of Component IV Glycera Dibranchiata Monomeric Hemoglobin · the same entry in another collection · chain A against A, TM-score 1.00
P15447 · AlphaFold monomer V2.0 prediction for globin, monomeric component M-IV (P15447) · a predicted model of the same protein · chain A against A, TM-score 0.99

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P15447
Elsewhere: RCSB PDB 1JF4 · PDBe 1JF4 · UniProt P15447

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