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The structure of xylose reductase, a dimeric aldo-keto reductase from candida tenuis
Analyse The structure of xylose reductase, a dimeric aldo-keto reductase from candida… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 1JEZ
- Type
- protein
- Length
- 599 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Xylose reductase
- EC
- 1.1.1.21
- UniProt
- O74237
- Pockets
- 8 · best druggability 0.65
Structure
x-ray diffraction · 2 distinct chains · 39% helix, 16% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Xylose reductase (EC 1.1.1.21) | protein | 300 | 40% helix, 16% strand | O74237 |
| B | Xylose reductase (EC 1.1.1.21) | protein | 299 | 39% helix, 16% strand | O74237 |
Pockets
8 pockets found on a 1 Å grid, 5 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 119 | 0.65 | 0.88 | 24 | empty |
| 2 | 156 | 0.61 | 0.84 | 30 | empty |
| 3 | 65 | 0.61 | 0.90 | 19 | empty |
| 4 | 382 | 0.59 | 0.76 | 37 | empty |
| 5 | 196 | 0.53 | 0.78 | 28 | empty |
Interfaces
1 interface between chains.
- A–B · 1250 Ų buried · 10 hydrogen bonds · protein-protein
Compared structures
- 1JEZ · The structure of xylose reductase, a dimeric aldo-keto reductase from candida tenuis · the same entry in another collection · chain A against A, TM-score 1.00
- O74237 · AlphaFold monomer V2.0 prediction for NAD(P)H-dependent D-xylose reductase (O74237) · a predicted model of the same protein · chain A against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt O74237
- Elsewhere: RCSB PDB 1JEZ · PDBe 1JEZ · UniProt O74237
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