Research workbench
Pksg, a hmg-CoA synthase from bacillus subtilus
Analyse Pksg, a hmg-CoA synthase from bacillus subtilus in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 4YXV
- Type
- protein
- Length
- 799 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Polyketide biosynthesis 3-hydroxy-3-methylglutaryl-acp synthase pksg
- EC
- 2.3.3.-
- UniProt
- P40830
- Pockets
- 6 · best druggability 0.73
Structure
x-ray diffraction · 2 distinct chains · 38% helix, 25% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Polyketide biosynthesis 3-hydroxy-3-methylglutaryl-acp synthase pksg (EC 2.3.3.-) | protein | 398 | 37% helix, 26% strand | P40830 |
| B | Polyketide biosynthesis 3-hydroxy-3-methylglutaryl-acp synthase pksg (EC 2.3.3.-) | protein | 401 | 38% helix, 25% strand | P40830 |
Pockets
6 pockets found on a 1 Å grid, 5 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 541 | 0.73 | 0.81 | 60 | empty |
| 2 | 555 | 0.73 | 0.81 | 62 | empty |
| 3 | 53 | 0.63 | 0.94 | 15 | empty |
| 4 | 160 | 0.59 | 0.83 | 21 | empty |
| 5 | 183 | 0.57 | 0.80 | 23 | empty |
Interfaces
1 interface between chains.
- A–B · 3011 Ų buried · 62 hydrogen bonds · protein-protein
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P40830
- Elsewhere: RCSB PDB 4YXV · PDBe 4YXV · UniProt P40830
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