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N-terminal domain of hmdiii from methanocaldococcus jannaschii

Analyse N-terminal domain of hmdiii from methanocaldococcus jannaschii in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 4YTE
Type: protein
Length: 194 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: H(2)-forming methylenetetrahydromethanopterin dehydrogenase-related protein MJ0715
UniProt: Q58125
Pockets: 1 · best druggability 0.48

Structure

x-ray diffraction · 1 distinct chain · 37% helix, 20% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	H(2)-forming methylenetetrahydromethanopterin dehydrogenase-related protein MJ0715	protein	194	37% helix, 20% strand	Q58125

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	187	0.48	0.75	31	empty

Compared structures

4YTE · N-terminal domain of HmdIII from Methanocaldococcus jannaschii · the same entry in another collection · chain A against A, TM-score 1.00
Q58125 · AlphaFold monomer V2.0 prediction for H(2)-forming methylenetetrahydromethanopterin… · a predicted model of the same protein · chain A against A, TM-score 0.97

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q58125
Elsewhere: RCSB PDB 4YTE · PDBe 4YTE · UniProt Q58125

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