Research workbench
Crystal structure of the C-terminal coiled coil of mouse bicaudal D1
Analyse Crystal structure of the C-terminal coiled coil of mouse bicaudal D1 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 4YTD
- Type
- protein
- Length
- 195 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Protein bicaudal D homolog 1
- UniProt
- Q8BR07
- Ligands
- PO4
- Pockets
- 1 · best druggability 0.30
Structure
x-ray diffraction · 2 distinct chains · 96% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Protein bicaudal D homolog 1 | protein | 96 | 94% helix, 0% strand | Q8BR07 |
| B | Protein bicaudal D homolog 1 | protein | 99 | 98% helix, 0% strand | Q8BR07 |
Ligands and binding sites
- PO4 · Phosphate ion · ion · 4 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 60 | 0.30 | 0.75 | 10 | empty |
Interfaces
1 interface between chains.
- A–B · 2265 Ų buried · 5 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 10 modified (engineered).
Compared structures
- 4YTD · Crystal structure of the C-terminal Coiled Coil of mouse Bicaudal D1 · the same entry in another collection · chain A against A, TM-score 1.00
- Q8BR07 · AlphaFold monomer V2.0 prediction for protein bicaudal D homolog 1 (Q8BR07) · a predicted model of the same protein · chain B against A, TM-score 0.94
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8BR07
- Elsewhere: RCSB PDB 4YTD · PDBe 4YTD · UniProt Q8BR07
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.