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Structure of cytochrome C2 from rhodospirillum centenum

Analyse Structure of cytochrome C2 from rhodospirillum centenum in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 1JDL
Type: protein
Length: 118 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Cytochrome C2, iso-2
UniProt: P81154
Ligands: HEM
Pockets: 1 · best druggability 0.76

Structure

x-ray diffraction · 1 distinct chain · 46% helix, 2% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Cytochrome C2, iso-2	protein	118	46% helix, 2% strand	P81154

Ligands and binding sites

HEM · Protoporphyrin IX containing Fe · ligand · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	205	0.76	0.90	33	HEM

Compared structures

1JDL · Structure of cytochrome c2 from Rhodospirillum Centenum · the same entry in another collection · chain A against A, TM-score 1.00
P81154 · AlphaFold monomer V2.0 prediction for cytochrome C2 iso-2 (P81154) · a predicted model of the same protein · chain A against A, TM-score 0.99

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P81154
Elsewhere: RCSB PDB 1JDL · PDBe 1JDL · UniProt P81154

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