Research workbench
Crystal structure of YEO7_YEAST
Analyse Crystal structure of YEO7_YEAST in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 1JD1
- Type
- protein
- Length
- 749 residues
- Chains
- 6
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Hypothetical 13.9 kda protein in FCY2-PET117 intergenic region
- UniProt
- P40037
- Pockets
- 10 · best druggability 0.76
Structure
x-ray diffraction · 5 distinct chains · 31% helix, 32% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, C | Hypothetical 13.9 kda protein in FCY2-PET117 intergenic region | protein | 126 | 30% helix, 32% strand | P40037 |
| B | Hypothetical 13.9 kda protein in FCY2-PET117 intergenic region | protein | 125 | 30% helix, 32% strand | P40037 |
| D | Hypothetical 13.9 kda protein in FCY2-PET117 intergenic region | protein | 124 | 31% helix, 32% strand | P40037 |
| E | Hypothetical 13.9 kda protein in FCY2-PET117 intergenic region | protein | 123 | 31% helix, 30% strand | P40037 |
| F | Hypothetical 13.9 kda protein in FCY2-PET117 intergenic region | protein | 125 | 30% helix, 32% strand | P40037 |
Pockets
10 pockets found on a 1 Å grid, 7 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 812 | 0.76 | 0.80 | 74 | empty |
| 2 | 74 | 0.75 | 0.98 | 23 | empty |
| 3 | 73 | 0.75 | 0.98 | 23 | empty |
| 4 | 79 | 0.61 | 0.89 | 22 | empty |
| 5 | 62 | 0.60 | 0.91 | 19 | empty |
Interfaces
9 interfaces between chains.
- A–B · 1013 Ų buried · 19 hydrogen bonds · protein-protein
- A–F · 1009 Ų buried · 19 hydrogen bonds · protein-protein
- B–F · 967 Ų buried · 19 hydrogen bonds · protein-protein
- C–D · 964 Ų buried · 19 hydrogen bonds · protein-protein
- D–E · 961 Ų buried · 19 hydrogen bonds · protein-protein
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P40037
- Elsewhere: RCSB PDB 1JD1 · PDBe 1JD1 · UniProt P40037
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