Research workbench
Native bacteroidetes-affiliated GH5 cellulase linked with a polysaccharide utilization locus
Analyse Native bacteroidetes-affiliated GH5 cellulase linked with a polysaccharide… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 4YHE
- Type
- protein
- Length
- 778 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- GH5
- UniProt
- A0A076MPD7
- Pockets
- 3 · best druggability 0.78
Structure
x-ray diffraction · 1 distinct chain · 42% helix, 13% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | GH5 | protein | 389 | 42% helix, 13% strand | A0A076MPD7 |
Pockets
3 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 813 | 0.78 | 0.82 | 70 | empty |
| 2 | 359 | 0.61 | 0.77 | 35 | empty |
| 3 | 359 | 0.60 | 0.77 | 36 | empty |
Interfaces
1 interface between chains.
- A–B · 562 Ų buried · 14 hydrogen bonds · protein-protein
Compared structures
- 4YHE · Native bacteroidetes-affiliated GH5 cellulase linked with a polysaccharide utilization… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A076MPD7
- Elsewhere: RCSB PDB 4YHE · PDBe 4YHE · UniProt A0A076MPD7
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