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HU38-20BP

Analyse HU38-20BP in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 4YFH
Type: protein + DNA
Length: 184 residues
Chains: 4
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: DNA-binding protein hu-alpha; Synthetic DNA strand
UniProt: P0ACF2

Structure

x-ray diffraction · 4 distinct chains · 45% helix, 24% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	DNA-binding protein hu-alpha	protein	74	49% helix, 24% strand	P0ACF2
B	DNA-binding protein hu-alpha	protein	87	41% helix, 24% strand	P0ACF2
C	Synthetic DNA strand	dna	11	—	—
D	Synthetic DNA strand	dna	12	—	—

Interfaces

3 interfaces between chains.

A–B · 1804 Å² buried · 6 hydrogen bonds · protein-protein
A–C · 237 Å² buried · 6 hydrogen bonds · protein-nucleic
B–D · 203 Å² buried · 5 hydrogen bonds · protein-nucleic

Compared structures

4YFH · HU38-20bp · the same entry in another collection · chain A against A, TM-score 1.00
P0ACF2 · AlphaFold monomer V2.0 prediction for DNA-binding protein hu-alpha (P0ACF2) · a predicted model of the same protein · chain A against A, TM-score 0.97

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P0ACF2
Elsewhere: RCSB PDB 4YFH · PDBe 4YFH · UniProt P0ACF2

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