Research workbench
Stress-induced protein 1 from caenorhabditis elegans
Analyse Stress-induced protein 1 from caenorhabditis elegans in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 4YDZ
- Type
- protein
- Length
- 464 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Stress-induced protein 1
- UniProt
- Q20363
- Pockets
- 4 · best druggability 0.41
Structure
x-ray diffraction · 2 distinct chains · 6% helix, 49% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, C | Stress-induced protein 1 | protein | 135 | 9% helix, 41% strand | Q20363 |
| B, D | Stress-induced protein 1 | protein | 97 | 3% helix, 59% strand | Q20363 |
Pockets
4 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 128 | 0.41 | 0.75 | 18 | empty |
| 2 | 130 | 0.36 | 0.72 | 18 | empty |
| 3 | 93 | 0.32 | 0.73 | 19 | empty |
| 4 | 51 | 0.26 | 0.74 | 9 | empty |
Interfaces
4 interfaces between chains.
- A–B · 1068 Ų buried · 25 hydrogen bonds · protein-protein
- C–D · 1066 Ų buried · 26 hydrogen bonds · protein-protein
- B–D · 766 Ų buried · 11 hydrogen bonds · protein-protein
- A–C · 63 Ų buried · 0 hydrogen bonds · protein-protein
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q20363
- Elsewhere: RCSB PDB 4YDZ · PDBe 4YDZ · UniProt Q20363
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