Research workbench
Structure determination of an integral membrane protein at room temperature from crystals in situ
Analyse Structure determination of an integral membrane protein at room temperature… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 4YCR
- Type
- protein
- Length
- 299 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Tellurite resistance protein teha homolog
- UniProt
- P44741
- Pockets
- 7 · best druggability 0.66
Structure
x-ray diffraction · 1 distinct chain · 84% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Tellurite resistance protein teha homolog | protein | 299 | 84% helix, 0% strand | P44741 |
Ligands and binding sites
- BOG · octyl beta-D-glucopyranoside · additive · 2 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
7 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 225 | 0.66 | 0.84 | 33 | empty |
| 2 | 260 | 0.62 | 0.81 | 39 | BOG |
| 3 | 109 | 0.56 | 0.83 | 15 | empty |
| 4 | 86 | 0.41 | 0.77 | 11 | empty |
| 5 | 133 | 0.38 | 0.73 | 18 | empty |
Compared structures
- 4YCR · Structure determination of an integral membrane protein at room temperature from crystals… · the same entry in another collection · chain A against A, TM-score 1.00
- P44741 · AlphaFold monomer V2.0 prediction for tellurite resistance protein teha homolog (P44741) · a predicted model of the same protein · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P44741
- Elsewhere: RCSB PDB 4YCR · PDBe 4YCR · UniProt P44741
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.