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Crystal structure of the mael domain of drosophila melanogaster maelstrom

Analyse Crystal structure of the mael domain of drosophila melanogaster maelstrom in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 4YBG
Type: protein
Length: 238 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Protein maelstrom
UniProt: Q9VNS0
Ligands: ZN
Pockets: 3 · best druggability 0.49

Structure

x-ray diffraction · 1 distinct chain · 48% helix, 19% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Protein maelstrom	protein	238	48% helix, 19% strand	Q9VNS0

Ligands and binding sites

ZN · Zinc ion · metal · chains A
ACT · Acetate ion · additive · chains A
EDO · 1,2-ethanediol · additive · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

3 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	171	0.49	0.77	19	ACT
2	123	0.42	0.76	20	empty
3	68	0.34	0.76	12	empty

Compared structures

4YBG · Crystal structure of the MAEL domain of Drosophila melanogaster Maelstrom · the same entry in another collection · chain A against A, TM-score 1.00
Q9VNS0 · AlphaFold monomer V2.0 prediction for protein maelstrom (Q9VNS0) · a predicted model of the same protein · chain A against A, TM-score 0.99

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q9VNS0
Elsewhere: RCSB PDB 4YBG · PDBe 4YBG · UniProt Q9VNS0

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